Elfsborg came from behind to win 3-1 at Standard Liege and avoid last place in Europa League Group C.
PSV Eindhoven were dumped out of the Europa League after losing 1-0 at home to Chornomorets on Thursday.
Juan Cuadrado fired home a 77th-minute winner as Fiorentina sealed top spot in UEFA Europa League Group E with a 2-1 win over Dnipro at Stadio Artemio Franchi.
Salzburg completed a perfect Europa League group stage with a comfortable 3-0 home victory over Esbjerg.
Apoel Nicosia's Europa League hopes were extinguished after they went down to a 2-0 defeat in a must-win game against Eintracht Frankfurt.
Zulte-Waregem missed out on qualification for the Europa League knockout stage after a 2-0 home defeat by Group D leaders Rubin Kazan.
Both sides finished with 10 men as Wigan saw their slim hopes of Europa League qualification crushed as Maribor won 2-1 in Group D in Uwe Rosler's first match.
Swansea qualified for the Europa League round-of-32 as Group A runners-up despite losing 1-0 away to St Gallen.
Trabzonspor secured top spot in Europa League Group J as they played out a goalless draw against Lazio at the Stadio Olimpico on Thursday evening.
Real Betis qualified for the Europa League's last 32 as a 0-0 draw with Rijeka earned them second spot in Group I.